<h1 id="imaging">Imaging<a aria-hidden="true" class="anchor-heading icon-link" href="#imaging"></a></h1>
<p>Imaging and sensing of ecosystem's physical features.</p>
<p>D’Urban Jackson, Tim, Gareth J. Williams, Guy Walker-Springett, and Andrew J. Davies. ‘Three-Dimensional Digital Mapping of Ecosystems: A New Era in Spatial Ecology’. Proceedings of the Royal Society B: <em>Biological Sciences</em> 287, no. 1920 (2020): 20192383. <a href="https://doi.org/10/gjrmzn">https://doi.org/10/gjrmzn</a>.</p>
<p>Galison, Peter, and Caroline A. Jones, eds. <em>Picturing Science, Producing Art</em>. Abingdon: Routledge, 1998.</p>
<p>Halpern, Orit. <em>Beautiful Data: A History of Vision and Reason Since 1945</em>. Durham: Duke University Press, 2015.</p>
<p>Coopmans, Catelijne, ed. <em>Representation in Scientific Practice Revisited</em>. Cambridge, MA: The MIT Press, 2014.</p>
<h2 id="software">Software<a aria-hidden="true" class="anchor-heading icon-link" href="#software"></a></h2>
<p>Commercial:</p>
<ul>
<li>Amira or Avizo (FEI-VSG)</li>
<li>CTAn and CTVol (Bruker)</li>
<li>ImagePro (Media Cybernetics)</li>
<li>Imaris (Oxford Instruments Bitplane)</li>
<li>Mimics (Materialise)</li>
<li>ScanIP (Simpleware)</li>
<li>Octopus (inCT and Inside Matters)</li>
<li>uCT (Scanco)</li>
<li>VG Studio (Volume Graphics)</li>
</ul>
<p>Free:</p>
<ul>
<li>3D Slicer (Pixmeo)</li>
<li>Chimera (UCSF)</li>
<li>Dream3D (Blue Quartz)</li>
<li>ImageJ or FIJI</li>
<li>IMOD (University of Colorado)</li>
<li>OsiriX</li>
<li>VisIt (LLNL)</li>
</ul>
<hr>
<strong>Backlinks</strong>
<ul>
<li><a href="/notes/v5ocaoqcm7rf3otdbsbf6oh">Model</a></li>
<li><a href="/notes/jfmt0blad6xtiqsedprs6so">Deltas</a></li>
</ul>

Imaging



This is the landing page for the work-in-progress research notes (aka _knowledge garden_) by [Stanislav Roudavski](https://unimelb.academia.edu/StanislavRoudavski) and [Deep Design Lab](https://wiki.deepdesignlab.online/).

The repository contains notes on topics in support of reserach, teaching, practical action, and outreach.

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